The 11 Best Secret Organizations and Agencies in Anime, Ranked

Hidden forces, wide influence, catastrophic stakes. Secret organizations are a great way to infuse mystery and suspense in anime.

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What's the deal with secret organizations? Well, when you have an important mission statement that would draw a lot of unwanted attention, you have to do it all in the dark! And that's common in anime.

Maybe you're a hero who wants to fight crime and injustice without any desire for fame or popularity. Or maybe you're the bad guy who wants to wreak havoc or conduct criminal activities without law enforcement all up in your business all the time.

And then there are overseer-type organizations who stay at a distance and simply observe, slightly involving themselves with subtle course corrections when the balance between forces appears to be tilting.

Here are our picks for the best secret organizations and agencies in anime, whether because they have the noblest goals, the coolest characters, or maybe something else that makes them standout.

11. The Kisugi Sisters (Cat's Eye)

The Kisugi sisters—Rui, Hitomi, and Ai—are art thieves who only steal works that once belonged to their father. They operate a cafe by day as their cover, which comes in handy for intel gathering.

By night, they shift gears and perform impossible heists. Although they always give hints as to what they're going to steal, the police force never manages to catch them.

10. The Guild (Bungo Stray Dogs)

The anime Bungo Stray Dogs features a handful of different organizations, like Port Mafia and the Armed Detective Agency. But there's also The Guild, which is similarly comprised of Gifted individuals, but this one operates as a secret society from outside Japan.

They're quite rich because their leader comes from old money (The Great Fitzgerald), and Francis Scott Key Fitzgerald is able to enhance his physical attributes in proportion to the wealth he spent to acquire it. The higher the amount, the stronger he can be.

Other Gifted members of the group include Howard Lovecraft (who almost took on both Chuya and Dazai on his own) and Louisa May Alcott (who's in charge of their plans and strategies).

9. V (Tokyo Ghoul)

The V organization wasn't fully explored in the Tokyo Ghoul anime series, yet they played a crucial part in the development of characters and plot. They're overseers who work in the shadows to maintain the balance between ghoul and human societies.

Members include Kisho Arima, Matsuri Washuu, Kichimura Washuu, and other unnamed characters who wear all-black outfits. Yoshimura, the manager of the Anteiku cafe, was also once a member of V, who worked as the organization's Cleaner (dispatcher).

8. SEELE (Neon Genesis Evangelion)

While NERV is the primary agency that's responsible for EVA operations, SEELE is the organization that's responsible for the events of Neon Genesis Evangelion.

They have ties with various world leaders and other world organizations, and their mission statement is to "unite humanity" using the so-called Human Instrumentality Project.

They'd been operating for many years behind the shadows, and they even helped cause the Second Impact. The incident was commonly known as some sort of accident, but in reality, it was a planned operation that almost ended in mankind's extinction.

7. Root (Naruto)

The Anbu were introduced halfway through the original Naruto anime as special ninjas who work directly under the Hokage. Much later, in Naruto Shippuden, we learned that there's a secret branch of Anbu called Root who work directly for Danzo.

Root is a shady group consisting of individuals who undergo special training from childhood. They're raised in pairs like brothers, then must fight each other to the death on the day of their graduation.

This process kills their emotional senses, crafting a true assassin that can kill without any remorse or pity on their targets, and these assassins operate in the shadows as "unseen ones who support Konoha."

6. Soul Reapers (Bleach)

Soul Society is a special organization that remains unknown to humans because they exist beyond the human realm.

Soul Reapers exist in a world of ghosts, spirits, and Hollows. They're all invisible to human eyes, but their existence greatly affects both realms—of the living and of the dead.

Their works include the purification of souls before they can enter Soul Society (similar to the afterlife) as well as the elimination of Hollows (monsters that eat the souls of both the deceased and the living).

5. Noah's Ark Circus (Black Butler)

Noah's Ark Circus, as the name suggests, is a traveling circus comprised of different individuals with different skills and performances. From beast tamers to acrobats, this circus offers entertainment like no other.

But it's just a front to cover up all the sinister activity that happens offstage—wherever this circus performs, you'll also find numerous incidents of missing children. It all leads to some gruesome truths that even the performers aren't totally aware of.

4. Jujutsu Sorcerers (Jujutsu Kaisen)

Sometimes, there are cases that a normal police force can't handle, and this is especially true when there are paranormal elements involved. That's when Jujutsu Sorcerers step in and take over.

Even the police don't know the full details of who they are, why they arrive on crime scenes, or how they got there even before the forensics division. All they know is that Jujutsu Sorcerers investigate the inexplicable (like the misconfigured corpses left by Mahito in the theater).

To make sure their secrets don't get out, Jujutsu Sorcerers disclose misleading details that make the incidents look like they were committed by human hands.

3. Black Organization (Case Closed)

Black Organization is the main antagonist of the Case Closed anime series, but they're known only by a handful of characters. They're the ones responsible for the current situation of Shinichi Kudo, who was turned into a young boy using the APTX drug.

Their operations include assassinations and other criminal activities, which are cover-ups for their truer and more sinister motives. Their members used alcoholic beverages as codenames, like Gin, Bourbon, and Vodka.

Though they work in secrecy, law agencies have managed to infiltrate and plant double agents among their ranks.

2. Direct Attack (Lycoris Recoil)

In Lycoris Recoil, Direct Attack (or DA) is like most clandestine law enforcement agencies, except they specialize in training and employing young girls, who are known as Lycoris.

DA maintains peace and prevents crimes before they happen, usually by eliminating threats and killing targets with no one noticing.

Why work secretly when they could operate overtly like normal police organizations? Well, it's their duty to make people believe that there are no more threats and that they're living in a harmonious community.

1. Twelve Kizuki (Demon Slayer)

In Demon Slayer, the existence of demons is a myth amongst normal people. No one has any real evidence because anyone who encounters a demon always ends up dead. Dead men tell no tales, right?

And if regular demons are mythical, then it only makes sense that the highest-ranking demons—the Twelve Kizuki—are complete unknowns to the world and the people.

These special demons have the power to stand on equal ground against the Hashira (or even surpass them) using their unique Blood Demon Arts plus the immense power they acquire from devouring human flesh.